Understanding the Model Viewer
What You're Seeing
This 3D view renders every molecule in the simulation as a coloured particle, positioned in the simulated world volume. Molecules are coloured by type — see the legend in the bottom-left corner.
The wireframe box shows the simulation boundary. The brown cylinder at the bottom is a hydrothermal vent chimney, and the semi-transparent horizontal planes show the thermal gradient (red = hot, blue = cold).
Vesicle Shells
Translucent spheres represent vesicles — lipid membrane protocells. Their colour indicates fitness:
- Blue — Low fitness (simple composition)
- Green — Medium fitness (some polymers)
- Gold — High fitness (RNA, peptides, catalysts)
Molecules inside vesicles are protected from ocean loss and can undergo selection, replication, and division.
Key Molecule Types
- RNA strands — information-carrying polymers
- Peptides — functional protein chains
- Lipids — membrane-forming molecules
- Amino acids — peptide building blocks
- Nucleotides — RNA building blocks
- Catalysts — glow red-pink, larger size
Blue = low → Gold = high